Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 156 curated entries in PaperBLAST's database that match '1.14.14.8'.

These curated entries have 122 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0661: dihydrouridine synthase family protein
is similar to:
PaperBLAST

A0A0U1WKA6: 4'-methoxyisoflavone 2'-hydroxylase (EC 1.14.14.89) from Slackia sp.

24% id,
46% cov

VIMSS209218: AhpF family protein/thioredoxin reductase
is similar to:
PaperBLAST

A0A0U1WKA6: 4'-methoxyisoflavone 2'-hydroxylase (EC 1.14.14.89) from Slackia sp.

25% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

731730-733064 (frame +3) on 1944
is similar to:
PaperBLAST

A0A0U1WKA6: 4'-methoxyisoflavone 2'-hydroxylase (EC 1.14.14.89) from Slackia sp.
Also see hits to annotated proteins above

24% id,
48% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory