Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 22 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1609: dihydrodipicolinate reductase
is similar to:
PaperBLAST

DvMF_0450: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Desulfovibrio vulgaris

76% id,
100% cov

Q9K1F1: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Neisseria meningitidis

40% id,
98% cov

DAPB_ECOLI / P04036: 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8 from Escherichia coli
DapB / b0031: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
dapB / P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli

41% id,
96% cov

More...

DVU1868: dihydrodipicolinate synthase
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

45% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory