Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 13 curated entries in PaperBLAST's database that match '1.2.1.18'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3319: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis

32% id,
96% cov

A0A081YAY7: malonate-semialdehyde dehydrogenase (EC 1.2.1.15); malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18); methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Pseudomonas sp.

31% id,
96% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

32% id,
92% cov

More...

DVU3294: aldehyde dehydrogenase (NADP) family protein
is similar to:
PaperBLAST

dddC / C8YX90: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Halomonas sp.

27% id,
92% cov

A0A081YAY7: malonate-semialdehyde dehydrogenase (EC 1.2.1.15); malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18); methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Pseudomonas sp.

26% id,
93% cov

PS417_10925: malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) from Pseudomonas simiae

27% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory