Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 157 curated entries in PaperBLAST's database that match '1.2.1.3'.

These curated entries have 118 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0492: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

ARGC_GEOSE / Q07906: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Geobacillus stearothermophilus

41% id,
100% cov

ARGC_ECOLI / P11446: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Escherichia coli
ArgC / b3958: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli
argC / P11446: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli
P11446: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Escherichia coli

39% id,
96% cov

lysY / Q4JAQ3: [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase (EC 1.2.1.38) from Sulfolobus acidocaldarius

37% id,
99% cov

More...

DVU3319: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

AL1A1_RABIT / Q8MI17: Retinal dehydrogenase 1; RALDH 1; RalDH1; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; EC 1.2.1.-; EC 1.2.1.36 from Oryctolagus cuniculus

32% id,
96% cov

A9YD19: retinal dehydrogenase (EC 1.2.1.36) from Danio rerio

32% id,
97% cov

ALDH3_YEAST / P54114: Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 from Saccharomyces cerevisiae
ALD3 / P54114: aldehyde dehydrogenase (EC 1.2.1.3) from Saccharomyces cerevisiae

32% id,
95% cov

More...

DVU3294: aldehyde dehydrogenase (NADP) family protein
is similar to:
PaperBLAST

peaE / B1N7H3: phenylacetaldehyde dehydrogenase monomer (EC 1.2.1.39) from Pseudomonas putida
B1N7H3: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

32% id,
93% cov

P27463: retinal dehydrogenase (EC 1.2.1.36) from Gallus gallus

32% id,
90% cov

V4GH04: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Pseudomonas putida

30% id,
94% cov

More...

DVU2405: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

29% id,
47% cov

DVU2545: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

27% id,
48% cov

DVU2396: alcohol dehydrogenase
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

27% id,
45% cov

DVU3119: AMP-binding enzyme family protein
is similar to:
PaperBLAST

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

24% id,
44% cov

B2HN69: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

26% id,
33% cov

DVU1466: acetylglutamate kinase
is similar to:
PaperBLAST

arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

29% id,
30% cov

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae

27% id,
30% cov

DVU2885: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

35% id,
18% cov

DVU0748: acetyl-CoA synthetase
is similar to:
PaperBLAST

LYS2_YEAST / P07702: L-2-aminoadipate reductase; Alpha-aminoadipate reductase; Alpha-AR; L-aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31; EC 1.2.1.95 from Saccharomyces cerevisiae

23% id,
21% cov

DVU1453: long-chain-fatty-acid--CoA ligase
is similar to:
PaperBLAST

LYS2_YEAST / P07702: L-2-aminoadipate reductase; Alpha-aminoadipate reductase; Alpha-AR; L-aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31; EC 1.2.1.95 from Saccharomyces cerevisiae

24% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2499627-2500928 (frame -2) on 1944
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum
Also see hits to annotated proteins above

27% id,
47% cov

1545708-1546646 (frame -2) on 1944
is similar to:
PaperBLAST

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

27% id,
33% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory