Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 97 curated entries in PaperBLAST's database that match '1.2.1.3' as complete word(s).

These curated entries have 82 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3319: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

AL1A1_RABIT / Q8MI17: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Oryctolagus cuniculus

32% id,
96% cov

ALDH3_YEAST / P54114: Aldehyde dehydrogenase [NAD(P)+] 2; EC 1.2.1.3 from Saccharomyces cerevisiae
ALD3 / P54114: aldehyde dehydrogenase (EC 1.2.1.8; EC 1.2.1.3) from Saccharomyces cerevisiae

32% id,
95% cov

geoB / H1ZV37: geranial dehydrogenase (EC 1.2.1.3; EC 1.2.1.86) from Castellaniella defragrans

34% id,
91% cov

More...

DVU3294: aldehyde dehydrogenase (NADP) family protein
is similar to:
PaperBLAST

Q92UV7: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Sinorhizobium meliloti

30% id,
94% cov

ALDH_PAENI / Q8GAK7: Aldehyde dehydrogenase; NAD/NADP-dependent aldehyde dehydrogenase; EC 1.2.1.3; EC 1.2.1.4 from Paenarthrobacter nicotinovorans

30% id,
94% cov

A6T8Z5: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Klebsiella pneumoniae

29% id,
96% cov

More...

DVU2405: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

29% id,
47% cov

DVU2545: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

27% id,
48% cov

DVU2396: alcohol dehydrogenase
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

27% id,
45% cov

DVU2885: alcohol dehydrogenase, iron-containing
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

35% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2499627-2500928 (frame -2) on 1944
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum
Also see hits to annotated proteins above

27% id,
47% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory