Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0464: prephenate dehydrogenase
is similar to:

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC; EC from Zymomonas mobilis

28% id,
81% cov

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC; EC from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC; EC from Escherichia coli

29% id,
69% cov

P43902: prephenate dehydrogenase (EC from Haemophilus influenzae

28% id,
68% cov

DVU0462: chorismate mutase/prephenate dehydratase
is similar to:

O30012: prephenate dehydrogenase (EC; prephenate dehydratase (EC; chorismate mutase (EC from Archaeoglobus fulgidus

33% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory