Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1426: glycine cleavage system H protein
is similar to:		 PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

 45% id,
76% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 44% id,
73% cov

DVU1424: glycine cleavage system P protein, subunit 2
is similar to:		 PaperBLAST

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

 37% id,
49% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 38% id,
48% cov

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 37% id,
49% cov

More...

DVU1425: glycine cleavage system P protein, subunit 1
is similar to:		 PaperBLAST

D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus

 33% id,
40% cov

GCSP_CHICK / P15505: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus
GLDC / P15505: glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus
P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus

 36% id,
37% cov

GCSP_HUMAN / P23378: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens
GLDC / P23378: Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens
P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 34% id,
38% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1499365-1500732 (frame -1) on 1944
is similar to:		 PaperBLAST

GCSP_CHICK / P15505: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus
GLDC / P15505: glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus
P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus
Also see hits to annotated proteins above

 34% id,
41% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory