Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 120 curated entries in PaperBLAST's database that match '1.5.1.2'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0997: 5,10-methylenetetrahydrofolate reductase
is similar to:
PaperBLAST

Q72DD2: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Desulfovibrio vulgaris

100% id,
100% cov

Q5SLG6: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Thermus thermophilus
Q72H39: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Thermus thermophilus

44% id,
97% cov

O67422: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Aquifex aeolicus

42% id,
97% cov

More...

DVU0323: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
is similar to:
PaperBLAST

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus

44% id,
86% cov

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

44% id,
86% cov

DVU2332: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

P5CR_ECOLI / P0A9L8: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Escherichia coli
ProC / b0386: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Escherichia coli
proC / P0A9L8: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Escherichia coli

35% id,
100% cov

PROC1 / F2E7Q2: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Hordeum vulgare

37% id,
95% cov

O87725: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Acetoanaerobium sticklandii

33% id,
100% cov

More...

DVU2401: hydrogenase, iron-sulfur cluster-binding subunit, putative
is similar to:
PaperBLAST

mvhD / Q2RJ82: MvhD (EC 1.5.1.20) from Moorella thermoacetica

39% id,
85% cov

DVU0849: Quinone-interacting membrane-bound oxidoreductase
is similar to:
PaperBLAST

mvhD / Q2RJ82: MvhD (EC 1.5.1.20) from Moorella thermoacetica

29% id,
86% cov

DVU0571: alanine dehydrogenase
is similar to:
PaperBLAST

CEO2_LACLL / P15244: N(5)-(carboxyethyl)ornithine synthase; CEOS; N(5)-(L-1-carboxyethyl)-L-ornithine:NADP(+) oxidoreductase; EC 1.5.1.24 from Lactococcus lactis
ceo / GB|AAA86385.1: N(5)-(carboxyethyl)ornithine synthase; EC 1.5.1.24 from Lactococcus lactis

22% id,
93% cov

DVU1585: vitamin B12-dependent methionine synthase family protein
is similar to:
PaperBLAST

YITJ_BACSU / O06745: Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; EC 2.1.1.10; EC 1.5.1.20 from Bacillus subtilis

30% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

366490-367476 (frame +1) on 1944
is similar to:
PaperBLAST

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus
Also see hits to annotated proteins above

42% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory