Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 48 curated entries in PaperBLAST's database that match '1.5.5.2'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3319: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
is similar to:
PaperBLAST

PRODH_THET2 / Q72IB8: Proline dehydrogenase; PRODH; Proline oxidase; TtPRODH; EC 1.5.5.2 from Thermus thermophilus
Q72IB8: proline dehydrogenase (EC 1.5.5.2) from Thermus thermophilus

31% id,
93% cov

PRODH_DEIRA / Q9RW55: Proline dehydrogenase; PRODH; DrPRODH; Proline oxidase; EC 1.5.5.2 from Deinococcus radiodurans

31% id,
93% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

33% id,
83% cov

More...

DVU2673: anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

27% id,
91% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

26% id,
90% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

26% id,
76% cov

More...

DVU1940: anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

24% id,
86% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

23% id,
82% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

23% id,
81% cov

DVU0377: thioredoxin reductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

29% id,
65% cov

VIMSS209218: AhpF family protein/thioredoxin reductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
68% cov

DVU1838: thioredoxin reductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
65% cov

DVU1457: thioredoxin reductase, putative
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
65% cov

DVU3294: aldehyde dehydrogenase (NADP) family protein
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

30% id,
43% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
43% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
43% cov

More...

DVU2402: heterodisulfide reductase, A subunit
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
27% cov

DVU1037: mercuric reductase, putative
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

55% id,
9% cov

DVU1423: 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

47% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory