Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 107 curated entries in PaperBLAST's database that match '2.1.2.1'.

These curated entries have 71 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1203: serine hydroxymethyltransferase is similar to:	PaperBLAST
GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis	65% id, 99% cov
GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus	64% id, 100% cov
GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri Q46A52: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanosarcina barkeri	64% id, 98% cov
GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus Q5SI56: glycine hydroxymethyltransferase (EC 2.1.2.1) from Thermus thermophilus	61% id, 100% cov
R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae	61% id, 97% cov
A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei	62% id, 97% cov
B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia	61% id, 97% cov
L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida	60% id, 99% cov
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus	61% id, 96% cov
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei	60% id, 98% cov
glyA / P77962: glycine hydroxymethyltransferase (EC 2.1.2.1) from Synechocystis sp.	61% id, 96% cov
Q5M0B4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Streptococcus thermophilus	60% id, 97% cov
PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens	59% id, 98% cov
glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum	61% id, 95% cov
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Campylobacter jejuni	59% id, 99% cov
GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli glyA / RF\|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli	60% id, 97% cov
GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica P0A2E1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Salmonella enterica	59% id, 97% cov
A8GTI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Rickettsia rickettsii	58% id, 97% cov
A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii	61% id, 92% cov
I7H6W6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Aphanothece halophytica	58% id, 96% cov
U5TRK6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Glutamicibacter nicotianae	58% id, 93% cov
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis P9WGI7: glycine hydroxymethyltransferase (EC 2.1.2.1) from Mycobacterium tuberculosis	55% id, 97% cov
P56089: glycine hydroxymethyltransferase (EC 2.1.2.1) from Helicobacter pylori	56% id, 97% cov
GLYA1_MYCTU / P9WGI9: Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1 from Mycobacterium tuberculosis P9WGI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Mycobacterium tuberculosis	54% id, 93% cov
GLYC_HUMAN / P34896: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT1 / P34896: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Homo sapiens	46% id, 95% cov
Q86LS9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Leishmania donovani	47% id, 91% cov
Q7SXN1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Danio rerio	44% id, 95% cov
GLYC_BOMMO / Q2F5L3: Serine hydroxymethyltransferase; SHMT; Glycine hydroxymethyltransferase; Serine methylase; bmSHMT; EC 2.1.2.1 from Bombyx mori	43% id, 96% cov
GLYC_RABIT / P07511: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Oryctolagus cuniculus	48% id, 86% cov
GLYC_SHEEP / P35623: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Ovis aries	49% id, 83% cov
GLYC_MOUSE / P50431: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	48% id, 85% cov
GLYC4_ARATH / O23254: Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1 from Arabidopsis thaliana	42% id, 95% cov
GLYM_HUMAN / P34897: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens SHMT2 / P34897: serine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens P34897: glycine hydroxymethyltransferase (EC 2.1.2.1) from Homo sapiens	45% id, 90% cov
F2QZA4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Komagataella pastoris	42% id, 95% cov
A9LDD9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Danio rerio	44% id, 92% cov
GLYC_CANAL / O13426: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1 from Candida albicans SHM2: serine hydroxymethyltransferase; EC 2.1.2.1 from Candida albicans	45% id, 89% cov
GLYM_SCHPO / Q10104: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Schizosaccharomyces pombe	46% id, 87% cov
GLYA_PLAF7 / Q8I566: Serine hydroxymethyltransferase; PfSHMTc; EC 2.1.2.1 from Plasmodium falciparum	40% id, 99% cov
SHMT / Q8W4V3: serine hydroxymethyltransferase (EC 2.1.2.1) from Chlamydomonas reinhardtii	46% id, 86% cov
GLYC_YEAST / P37291: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM2 / P37291: serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) from Saccharomyces cerevisiae	46% id, 87% cov
GLYM2_ARATH / Q94C74: Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1 from Arabidopsis thaliana	45% id, 88% cov
GLYM_MOUSE / Q9CZN7: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus	47% id, 82% cov
GLYM_YEAST / P37292: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae SHM1 / P37292: serine hydroxymethyltransferase, mitochondrial (EC 2.1.2.1) from Saccharomyces cerevisiae	45% id, 84% cov
GLYC_EREGS / Q75BQ6: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii Q75BQ6: glycine hydroxymethyltransferase (EC 2.1.2.1) from Eremothecium gossypii	43% id, 87% cov
GLYP3_ARATH / Q94JQ3: Serine hydroxymethyltransferase 3, chloroplastic; AtSHM3; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1 from Arabidopsis thaliana Q94JQ3: glycine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	47% id, 79% cov
G7ILW0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Medicago truncatula	48% id, 79% cov
GLYM1_ARATH / Q9SZJ5: Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1 from Arabidopsis thaliana SHM1 / Q9SZJ5: serine hydroxymethyltransferase (EC 2.1.2.1) from Arabidopsis thaliana	43% id, 87% cov
A5K8L9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Plasmodium vivax	41% id, 89% cov
GLYM_EREGS / Q758F0: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii	44% id, 80% cov
Q58992: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanocaldococcus jannaschii	37% id, 92% cov
Q9UWT5: glycine hydroxymethyltransferase (EC 2.1.2.1) from Saccharolobus solfataricus	31% id, 92% cov
More...

DVU2446: 3-methyl-2-oxobutanoate hydroxymethyltransferase is similar to:	PaperBLAST
PANB_MYCTU / P9WIL7: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Mycobacterium tuberculosis	50% id, 100% cov
PANB_THEKO / Q5JCY6: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Thermococcus kodakarensis panB / Q5JCY6: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Thermococcus kodakarensis	49% id, 99% cov
PANB_CORGL / Q9X712: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Corynebacterium glutamicum	48% id, 100% cov
PANB_ECOLI / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Escherichia coli PanB / b0134: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli panB / GB\|BAB96711.1: 3-methyl-2-oxobutanoate hydroxymethyltransferase; EC 2.1.2.11 from Escherichia coli panB / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli	45% id, 100% cov
PANB_EMENI / Q9Y7B6: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; EC 2.1.2.11 from Emericella nidulans pantoB / GB\|AAD37248.1: 3-methyl-2-oxobutanoate hydroxymethyltransferase; EC 2.1.2.11 from Emericella nidulans	46% id, 85% cov
PANB2_ARATH / Q9M315: 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial; Ketopantoate hydroxymethyltransferase 2; EC 2.1.2.11 from Arabidopsis thaliana	45% id, 82% cov
PANB1_ARATH / O82357: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial; Ketopantoate hydroxymethyltransferase 1; EC 2.1.2.11 from Arabidopsis thaliana PANB1 / O82357: ketopantoate hydroxymethyltransferase (EC 2.1.2.11) from Arabidopsis thaliana	45% id, 83% cov
PANB_YEAST / P38122: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Extracellular matrix protein 31; Ketopantoate hydroxymethyltransferase; EC 2.1.2.11 from Saccharomyces cerevisiae ECM31 / P38122: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Saccharomyces cerevisiae	39% id, 95% cov
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DVU1684: glycine cleavage system T protein is similar to:	PaperBLAST
Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens	39% id, 99% cov
PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens	38% id, 99% cov
PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae	38% id, 99% cov
GCST_CHICK / P28337: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Gallus gallus AMT / P28337: aminomethyltransferase (EC 2.1.2.10) from Gallus gallus	37% id, 92% cov
GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli	35% id, 98% cov
BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis	33% id, 98% cov
GCST_YEAST / P48015: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; Glycine decarboxylase complex subunit T; EC 2.1.2.10 from Saccharomyces cerevisiae	34% id, 95% cov
GCST_HUMAN / P48728: Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens AMT / P48728: aminomethyltransferase (EC 2.1.2.10) from Homo sapiens	33% id, 90% cov
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DVU2999: methionyl-tRNA formyltransferase, putative is similar to:	PaperBLAST
WBKC_BRUA2 / Q2YML4: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella abortus WBKC_BRUME / F8WJP6: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella melitensis	35% id, 46% cov
ARNA_YERPS / Q93PD8: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Yersinia pseudotuberculosis	28% id, 33% cov

DVU0736: phosphoribosylglycinamide formyltransferase is similar to:	PaperBLAST
WBKC_BRUA2 / Q2YML4: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella abortus WBKC_BRUME / F8WJP6: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella melitensis	23% id, 63% cov

DVU3365: methionyl-tRNA formyltransferase is similar to:	PaperBLAST
ARNA_YERPS / Q93PD8: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Yersinia pseudotuberculosis	34% id, 41% cov
ARNA_SALTY / O52325: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Salmonella typhimurium	30% id, 44% cov
ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli	29% id, 44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory