Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 6 curated entries in PaperBLAST's database that match '2.3.1.182'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1914: 2-isopropylmalate synthase/homocitrate synthase family protein
is similar to:
PaperBLAST

CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.1.182 from Geobacter sulfurreducens
Q74C76: (R)-citramalate synthase (EC 2.3.1.182) from Geobacter sulfurreducens

55% id,
99% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.1.182) from Thermoanaerobacter sp.

48% id,
100% cov

CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.1.182 from Sulfolobus acidocaldarius

44% id,
99% cov

More...

DVU2981: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.1.182 from Methanocaldococcus jannaschii

43% id,
100% cov

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.1.182 from Leptospira interrogans

31% id,
98% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.1.182) from Thermoanaerobacter sp.

28% id,
100% cov

More...

DVUA0016: homocitrate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.1.182 from Methanocaldococcus jannaschii

33% id,
74% cov

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.1.182 from Leptospira interrogans

25% id,
69% cov

CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.1.182 from Geobacter sulfurreducens
Q74C76: (R)-citramalate synthase (EC 2.3.1.182) from Geobacter sulfurreducens

26% id,
66% cov

More...

DVU0398: HMGL-like domain protein
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.1.182 from Methanocaldococcus jannaschii

27% id,
78% cov

CIMA_LEPIN / Q8F3Q1: (R)-citramalate synthase CimA; LiCMS; EC 2.3.1.182 from Leptospira interrogans

27% id,
67% cov

CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.1.182 from Geobacter sulfurreducens
Q74C76: (R)-citramalate synthase (EC 2.3.1.182) from Geobacter sulfurreducens

24% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory