Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 65 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0565: glyceraldehyde 3-phosphate dehydrogenase
is similar to:
PaperBLAST

TYPH_LACRH / P19663: Thymidine phosphorylase; TdRPase; EC 2.4.2.4 from Lactobacillus rhamnosus

67% id,
91% cov

DVU2230: purine nucleoside phosphorylase
is similar to:
PaperBLAST

MTIP_PSEAE / Q9HZK1: S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa
PA3004 / Q9HZK1: S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa
Q9HZK1: S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa

27% id,
98% cov

DVU0635: dolichyl-phosphate-mannose-protein mannosyltransferase family protein
is similar to:
PaperBLAST

ARNT_SALTY / O52327: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Salmonella typhimurium
O52327: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Salmonella enterica

26% id,
74% cov

AAL34393.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT) (EC 2.4.2.43) from

26% id,
74% cov

DVU0726: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

Q8THU2: tRNA-guanosine34 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

29% id,
66% cov

ATGT_PYRFU / Q8TH08: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Pyrococcus furiosus

26% id,
60% cov

ATGT_PYRHO / O58843: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Pyrococcus horikoshii
O58843: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Pyrococcus horikoshii

27% id,
57% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

141271-141699 (frame -3) on 1945
is similar to:
PaperBLAST

neoM / Q53U09: neamine phosphoribosyltransferase (EC 2.4.2.49) from Streptomyces fradiae

38% id,
14% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory