Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 44 curated entries in PaperBLAST's database that match '2.6.1.19' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU2347: acetylornithine aminotransferase
is similar to:		 PaperBLAST

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 41% id,
94% cov

slr1022 / P73133: bifunctional acetylornithine transaminase/4-aminobutyrate—2-oxoglutarate transaminase (EC 2.6.1.19; EC 2.6.1.11) from Synechocystis sp.
P73133: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 40% id,
92% cov

Sama_2636: gamma-aminobutyrate transaminase (EC 2.6.1.19) from Shewanella amazonensis

 33% id,
100% cov

More...

DVU2559: adenosylmethionine--8-amino-7-oxononanoate aminotransferase
is similar to:		 PaperBLAST

AO353_08585: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 32% id,
97% cov

gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator
Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator

 33% id,
93% cov

Sama_2643: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis

 31% id,
98% cov

More...

DVU3168: glutamate-1-semialdehyde-2,1-aminomutase
is similar to:		 PaperBLAST

PUUE_ECOLI / P50457: 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli
GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 31% id,
98% cov

gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator
Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator

 33% id,
88% cov

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 33% id,
85% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory