Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 26 curated entries in PaperBLAST's database that match '2.6.1.52' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0494: aminotransferase, class V
is similar to:
PaperBLAST

P74281: phosphoserine transaminase (EC 2.6.1.52) from Synechocystis sp.

37% id,
100% cov

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

35% id,
95% cov

DVU3121: aminotransferase, class V
is similar to:
PaperBLAST

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

33% id,
88% cov

P74281: phosphoserine transaminase (EC 2.6.1.52) from Synechocystis sp.

32% id,
88% cov

DVU0767: aminotransferase, class V
is similar to:
PaperBLAST

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

33% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory