Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 167 curated entries in PaperBLAST's database that match '2.7.1.15'.

These curated entries have 106 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1007: cobinamide kinase/cobinamide phosphate guanylyltransferase
is similar to:
PaperBLAST

cobP / P29931: CobP (EC 2.7.1.156; EC 2.7.7.62) from Sinorhizobium sp.

46% id,
95% cov

COBU_SALTY / Q05599: Bifunctional adenosylcobalamin biosynthesis protein CobU; Adenosylcobinamide kinase; Adenosylcobinamide-phosphate guanylyltransferase; EC 2.7.1.156; EC 2.7.7.62 from Salmonella typhimurium
cobU / Q05599: adenosylcobinamide-phosphate guanylyltransferase subunit (EC 2.7.1.156; EC 2.7.7.62) from Salmonella typhimurium

40% id,
99% cov

CobU / b1993: cobinamide-P guanylyltransferase / cobinamide kinase (EC 2.7.7.62; EC 2.7.1.156) from Escherichia coli
cobU / RF|NP_416497: bifunctional adenosylcobalamin biosynthesis protein CobU; EC 2.7.1.156; EC 2.7.7.62 from Escherichia coli

40% id,
99% cov

DVU0988: carbohydrate kinase, PfkB family
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

25% id,
87% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

24% id,
88% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

24% id,
87% cov

More...

DVU3361: ADP-heptose synthase, putative
is similar to:
PaperBLAST

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

25% id,
79% cov

RBSK_SCHPO / O60116: Ribokinase; RK; EC 2.7.1.15 from Schizosaccharomyces pombe

30% id,
38% cov

DVU0931: phosphomethylpyrimidine kinase
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
45% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

29% id,
38% cov

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

29% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory