Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 111 curated entries in PaperBLAST's database that match '2.7.1.6'.

These curated entries have 80 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0988: carbohydrate kinase, PfkB family
is similar to:
PaperBLAST

MIK_ARATH / Q93Z01: Inositol 3-kinase; Myo-inositol kinase; AtMIK; EC 2.7.1.64 from Arabidopsis thaliana

28% id,
69% cov

MIK_MAIZE / Q5GA22: Inositol 3-kinase; Myo-inositol kinase; Protein LOW PHYTIC ACID 3; EC 2.7.1.64 from Zea mays
lpa3 / Q5GA22: myo-inositol kinase (EC 2.7.1.64) from Zea mays

40% id,
19% cov

MIK_ORYSJ / Q84R36: Inositol 3-kinase; Myo-inositol kinase; OsMIK; Protein LOW PHYTIC ACID; EC 2.7.1.64 from Oryza sativa

40% id,
18% cov

DVU3361: ADP-heptose synthase, putative
is similar to:
PaperBLAST

MIK_ARATH / Q93Z01: Inositol 3-kinase; Myo-inositol kinase; AtMIK; EC 2.7.1.64 from Arabidopsis thaliana

22% id,
68% cov

MIK_ORYSJ / Q84R36: Inositol 3-kinase; Myo-inositol kinase; OsMIK; Protein LOW PHYTIC ACID; EC 2.7.1.64 from Oryza sativa

27% id,
40% cov

MIK_MAIZE / Q5GA22: Inositol 3-kinase; Myo-inositol kinase; Protein LOW PHYTIC ACID 3; EC 2.7.1.64 from Zea mays
lpa3 / Q5GA22: myo-inositol kinase (EC 2.7.1.64) from Zea mays

33% id,
23% cov

DVU1633: PTS system, IIB component
is similar to:
PaperBLAST

manX / RF|NP_416331.1: PTS system mannose-specific EIIAB component; EC 2.7.1.-; EC 2.7.1.69 from Escherichia coli

32% id,
44% cov

DVU1632: PTS system, IIA component
is similar to:
PaperBLAST

manX / RF|NP_416331.1: PTS system mannose-specific EIIAB component; EC 2.7.1.-; EC 2.7.1.69 from Escherichia coli

28% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory