Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 17 curated entries in PaperBLAST's database that match '3.5.1.18' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU2575: peptidase, M20/M25/M40 family
is similar to:
PaperBLAST

Q59284: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Corynebacterium glutamicum

25% id,
97% cov

DVU1827: acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein
is similar to:
PaperBLAST

DAPE_ECOLI / P0AED7: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Escherichia coli
MsgB / b2472: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli
dapE / RF|NP_416967: succinyl-diaminopimelate desuccinylase; EC 3.5.1.18 from Escherichia coli
dapE / P0AED7: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Escherichia coli

24% id,
96% cov

DVU2884: peptidase, M18 family
is similar to:
PaperBLAST

DAPE_HAEIN / P44514: Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae
dapE / P44514: N-succinyl-L,L-diaminopimelate desuccinylase subunit (EC 3.5.1.18) from Haemophilus influenzae
P44514: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) from Haemophilus influenzae

35% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory