Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 182 curated entries in PaperBLAST's database that match '3.5.1.9'.

These curated entries have 136 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU2139: histone deacetylase family protein is similar to:	PaperBLAST
Q70I53: amidase (EC 3.5.1.4); histone deacetylase (EC 3.5.1.98) from Alcaligenes sp.	35% id, 80% cov
Q2QWU2: histone deacetylase (EC 3.5.1.98) from Oryza sativa	37% id, 57% cov
HDA15_ARATH / Q8GXJ1: Histone deacetylase 15; EC 3.5.1.98 from Arabidopsis thaliana	33% id, 53% cov
HDA8_ARATH / Q94EJ2: Histone deacetylase 8; EC 3.5.1.98 from Arabidopsis thaliana	30% id, 56% cov
HDA11_DICDI / Q55FN5: Type-1 histone deacetylase 1; DdHdaA; EC 3.5.1.98 from Dictyostelium discoideum	27% id, 57% cov
HDA12_DICDI / Q55BW2: Histone deacetylase B; DdHdaB; Type-1 histone deacetylase 2; EC 3.5.1.98 from Dictyostelium discoideum	28% id, 52% cov
HDA9_ARATH / Q8H0W2: Histone deacetylase 9; AtHDAC9; EC 3.5.1.98 from Arabidopsis thaliana	28% id, 53% cov
HDAC8_HUMAN / Q9BY41: Histone deacetylase 8; HD8; Protein deacetylase HDAC8; Protein decrotonylase HDAC8; EC 3.5.1.98; EC 3.5.1.- from Homo sapiens Q9BY41: histone deacetylase (EC 3.5.1.98) from Homo sapiens	28% id, 53% cov
HDAC8_MOUSE / Q8VH37: Histone deacetylase 8; HD8; Protein deacetylase HDAC8; Protein decrotonylase HDAC8; EC 3.5.1.98; EC 3.5.1.- from Mus musculus	29% id, 51% cov
HDA1A_XENLA / Q91695: Probable histone deacetylase 1-A; HD1-A; AB21; HDM; Maternally-expressed histone deacetylase; Protein deacetylase HDAC1-A; Protein decrotonylase HDAC1-A; EC 3.5.1.98; EC 3.5.1.- from Xenopus laevis	24% id, 60% cov
HDAC1_ORYSJ / Q7Y0Y8: Histone deacetylase 1; OsHDAC1; EC 3.5.1.98 from Oryza sativa	26% id, 53% cov
CLR3_SCHPO / P56523: Histone deacetylase clr3; Cryptic loci regulator 3; EC 3.5.1.98 from Schizosaccharomyces pombe	33% id, 40% cov
HDA5_ARATH / Q8RX28: Histone deacetylase 5; EC 3.5.1.98 from Arabidopsis thaliana	28% id, 47% cov
HDAC1_MOUSE / O09106: Histone deacetylase 1; HD1; Protein deacetylase HDAC1; Protein decrotonylase HDAC1; EC 3.5.1.98; EC 3.5.1.- from Mus musculus O09106: histone deacetylase (EC 3.5.1.98) from Mus musculus	25% id, 53% cov
HDAC1_HUMAN / Q13547: Histone deacetylase 1; HD1; Protein deacetylase HDAC1; Protein decrotonylase HDAC1; EC 3.5.1.98; EC 3.5.1.- from Homo sapiens Q13547: histone deacetylase (EC 3.5.1.98) from Homo sapiens	25% id, 53% cov
Q7K6A1: histone deacetylase (EC 3.5.1.98) from Plasmodium falciparum	27% id, 48% cov
HDA2_CAEEL / Q09440: Putative histone deacetylase 2; EC 3.5.1.98 from Caenorhabditis elegans	30% id, 44% cov
HDA1B_XENLA / O42227: Probable histone deacetylase 1-B; HD1-B; Protein deacetylase HDAC1-B; Protein decrotonylase HDAC1-B; RPD3 homolog; EC 3.5.1.98; EC 3.5.1.- from Xenopus laevis	25% id, 53% cov
HDAC1_DROME / Q94517: Histone deacetylase HDAC1; HD; EC 3.5.1.98 from Drosophila melanogaster	26% id, 49% cov
HDA18_ARATH / Q8LRK8: Histone deacetylase 18; EC 3.5.1.98 from Arabidopsis thaliana	33% id, 38% cov
PHD1_SCHPO / O13298: Histone deacetylase phd1; EC 3.5.1.98 from Schizosaccharomyces pombe	28% id, 45% cov
HDAC2_MOUSE / P70288: Histone deacetylase 2; HD2; Protein deacylase HDAC2; YY1 transcription factor-binding protein; EC 3.5.1.98; EC 3.5.1.- from Mus musculus P70288: histone deacetylase (EC 3.5.1.98) from Mus musculus	24% id, 52% cov
HDAC2_HUMAN / Q92769: Histone deacetylase 2; HD2; Protein deacylase HDAC2; EC 3.5.1.98; EC 3.5.1.- from Homo sapiens Q92769: histone deacetylase (EC 3.5.1.98) from Homo sapiens	24% id, 52% cov
HDA19_ARATH / O22446: Histone deacetylase 19; AtHD1; HD; EC 3.5.1.98 from Arabidopsis thaliana	24% id, 50% cov
Q7SEL7: histone deacetylase (EC 3.5.1.98) from Neurospora crassa	30% id, 40% cov
O88895: histone deacetylase (EC 3.5.1.98) from Mus musculus	25% id, 49% cov
HDAC3_HUMAN / O15379: Histone deacetylase 3; HD3; Protein deacetylase HDAC3; Protein deacylase HDAC3; RPD3-2; SMAP45; EC 3.5.1.98; EC 3.5.1.- from Homo sapiens	25% id, 48% cov
HDAC3_MOUSE / O88895: Histone deacetylase 3; HD3; Protein deacetylase HDAC3; Protein deacylase HDAC3; EC 3.5.1.98; EC 3.5.1.- from Mus musculus HDAC3_RAT / Q6P6W3: Histone deacetylase 3; HD3; Protein deacetylase HDAC3; Protein deacylase HDAC3; EC 3.5.1.98; EC 3.5.1.- from Rattus norvegicus	25% id, 48% cov
HDA1_CAEEL / O17695: Histone deacetylase 1; EC 3.5.1.98 from Caenorhabditis elegans	28% id, 42% cov
HOS2_YEAST / P53096: Probable histone deacetylase HOS2; EC 3.5.1.98 from Saccharomyces cerevisiae	28% id, 42% cov
HDA1_YEAST / P53973: Histone deacetylase HDA1; EC 3.5.1.98 from Saccharomyces cerevisiae	35% id, 33% cov
Q803C3: histone deacetylase (EC 3.5.1.98) from Danio rerio	24% id, 48% cov
HDA6_ARATH / Q9FML2: Histone deacetylase 6; AtHDA6; EC 3.5.1.98 from Arabidopsis thaliana	28% id, 42% cov
HDA1_CANAL / Q5A960: Histone deacetylase HDA1; EC 3.5.1.98 from Candida albicans	31% id, 36% cov
Q7RY64: histone deacetylase (EC 3.5.1.98) from Neurospora crassa	32% id, 34% cov
Q7SEB0: histone deacetylase (EC 3.5.1.98) from Neurospora crassa	27% id, 38% cov
Q969S8: histone deacetylase (EC 3.5.1.98) from Homo sapiens	30% id, 32% cov
Q7Z8L7: histone deacetylase (EC 3.5.1.98) from Aspergillus nidulans	36% id, 26% cov
HDA4_CAEEL / O17323: Histone deacetylase 4; CeHDA-7; Histone deacetylase 7; EC 3.5.1.98 from Caenorhabditis elegans	33% id, 29% cov
HDAC7_MOUSE / Q8C2B3: Histone deacetylase 7; HD7; Histone deacetylase 7A; HD7a; EC 3.5.1.98 from Mus musculus	31% id, 29% cov
HDAC2_ORYSJ / Q6YV04: Histone deacetylase 2; OsHDAC2; EC 3.5.1.98 from Oryza sativa Q6YV04: histone deacetylase (EC 3.5.1.98) from Oryza sativa	25% id, 33% cov
HDAC9_HUMAN / Q9UKV0: Histone deacetylase 9; HD9; Histone deacetylase 7B; HD7; HD7b; Histone deacetylase-related protein; MEF2-interacting transcription repressor MITR; EC 3.5.1.98 from Homo sapiens Q9UKV0: histone deacetylase (EC 3.5.1.98) from Homo sapiens	31% id, 27% cov
HDAC3_ORYSJ / Q7Y0Y6: Histone deacetylase 3; OsHDAC3; EC 3.5.1.98 from Oryza sativa	25% id, 33% cov
HDAC4_MOUSE / Q6NZM9: Histone deacetylase 4; HD4; EC 3.5.1.98 from Mus musculus	27% id, 30% cov
HDAC7_HUMAN / Q8WUI4: Histone deacetylase 7; HD7; Histone deacetylase 7A; HD7a; EC 3.5.1.98 from Homo sapiens Q8WUI4: histone deacetylase (EC 3.5.1.98) from Homo sapiens	32% id, 24% cov
HDAC5_HUMAN / Q9UQL6: Histone deacetylase 5; HD5; Antigen NY-CO-9; EC 3.5.1.98 from Homo sapiens	31% id, 24% cov
HDAC4_HUMAN / P56524: Histone deacetylase 4; HD4; EC 3.5.1.98 from Homo sapiens P56524: histone deacetylase (EC 3.5.1.98) from Homo sapiens	31% id, 23% cov
HDAC5_MOUSE / Q9Z2V6: Histone deacetylase 5; HD5; Histone deacetylase mHDA1; EC 3.5.1.98 from Mus musculus	33% id, 21% cov
HDAC6_MOUSE / Q9Z2V5: Histone deacetylase 6; HD6; Histone deacetylase mHDA2; Tubulin-lysine deacetylase HDAC6; EC 3.5.1.98; EC 3.5.1.- from Mus musculus Q9Z2V5: histone deacetylase (EC 3.5.1.98) from Mus musculus	28% id, 23% cov
HDAC4_RAT / Q99P99: Histone deacetylase 4; HD4; EC 3.5.1.98 from Rattus norvegicus	31% id, 21% cov
Q7S8C9: histone deacetylase (EC 3.5.1.98) from Neurospora crassa	27% id, 22% cov
HDAC6_HUMAN / Q9UBN7: Histone deacetylase 6; HD6; Tubulin-lysine deacetylase HDAC6; EC 3.5.1.98; EC 3.5.1.- from Homo sapiens Q9UBN7: histone deacetylase (EC 3.5.1.98) from Homo sapiens	31% id, 18% cov
HDA22_DICDI / Q54VQ7: Type-2 histone deacetylase 2; DdHdaC; EC 3.5.1.98 from Dictyostelium discoideum	35% id, 14% cov
HOS3_YEAST / Q02959: Histone deacetylase HOS3; EC 3.5.1.98 from Saccharomyces cerevisiae	45% id, 9% cov
Q7Z8L9: histone deacetylase (EC 3.5.1.98) from Aspergillus nidulans	30% id, 13% cov
HDA21_DICDI / Q54X15: Type-2 histone deacetylase 1; DdHdaD; EC 3.5.1.98 from Dictyostelium discoideum	34% id, 9% cov
More...

DVU0808: glutamyl-tRNA(Gln) amidotransferase, A subunit is similar to:	PaperBLAST
FAAH_ARATH / Q7XJJ7: Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana Q7XJJ7: fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana	33% id, 77% cov
FAAH1_PIG / Q9TUI8: Fatty-acid amide hydrolase 1; Anandamide amidase; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Sus scrofa	29% id, 56% cov
FAAH2_HUMAN / Q6GMR7: Fatty-acid amide hydrolase 2; Amidase domain-containing protein; Anandamide amidohydrolase 2; Oleamide hydrolase 2; EC 3.5.1.99 from Homo sapiens FAAH2 / Q6GMR7: fatty-acid amide hydrolase 2 (EC 3.5.1.99; EC 3.5.1.60) from Homo sapiens Q6GMR7: amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens	34% id, 45% cov
FAAH4_CAEEL / Q9U217: Monoglyceride lipase faah-4; Fatty acid amide hydrolase 4; EC 3.1.1.23; EC 3.5.1.99 from Caenorhabditis elegans	28% id, 53% cov
A0A077JIE7: acyl-homoserine-lactone acylase (EC 3.5.1.97) from Acinetobacter sp.	39% id, 35% cov
FAAH1_MOUSE / O08914: Fatty-acid amide hydrolase 1; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Mus musculus O08914: amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Mus musculus	37% id, 32% cov
FAAH1_HUMAN / O00519: Fatty-acid amide hydrolase 1; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Homo sapiens FAAH / O00519: fatty acid amide hydrolase 1 monomer (EC 3.5.1.60; EC 3.5.1.99) from Homo sapiens O00519: amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens	36% id, 32% cov
FAAH1_RAT / P97612: Fatty-acid amide hydrolase 1; Anandamide amidase; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Rattus norvegicus P97612: amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Rattus norvegicus	38% id, 28% cov
More...

DVU0364: para-aminobenzoate/anthranilate synthase glutamine amidotransferase is similar to:	PaperBLAST
Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens	30% id, 62% cov

DVU1043: GMP synthase is similar to:	PaperBLAST
Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens	26% id, 63% cov
Sama_0794: gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) from Shewanella amazonensis	28% id, 53% cov

DVU1623: CTP synthase is similar to:	PaperBLAST
BWI76_RS10705: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Klebsiella michiganensis	44% id, 21% cov

DVU3194: GTP-binding protein EngA is similar to:	PaperBLAST
C1IC97: histone deacetylase (EC 3.5.1.98) from Hordeum vulgare	31% id, 15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

893456-894943 (frame -3) on 1944 is similar to:	PaperBLAST
FAAH_ARATH / Q7XJJ7: Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana Q7XJJ7: fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana Also see hits to annotated proteins above	32% id, 80% cov
FAAH1_PIG / Q9TUI8: Fatty-acid amide hydrolase 1; Anandamide amidase; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Sus scrofa Also see hits to annotated proteins above	28% id, 57% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory