Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 182 curated entries in PaperBLAST's database that match '3.5.1.9'.

These curated entries have 136 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU2139: histone deacetylase family protein
is similar to:
PaperBLAST

Q70I53: amidase (EC 3.5.1.4); histone deacetylase (EC 3.5.1.98) from Alcaligenes sp.

35% id,
80% cov

Q2QWU2: histone deacetylase (EC 3.5.1.98) from Oryza sativa

37% id,
57% cov

HDA15_ARATH / Q8GXJ1: Histone deacetylase 15; EC 3.5.1.98 from Arabidopsis thaliana

33% id,
53% cov

More...

DVU0808: glutamyl-tRNA(Gln) amidotransferase, A subunit
is similar to:
PaperBLAST

FAAH_ARATH / Q7XJJ7: Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana
Q7XJJ7: fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana

33% id,
77% cov

FAAH1_PIG / Q9TUI8: Fatty-acid amide hydrolase 1; Anandamide amidase; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Sus scrofa

29% id,
56% cov

FAAH2_HUMAN / Q6GMR7: Fatty-acid amide hydrolase 2; Amidase domain-containing protein; Anandamide amidohydrolase 2; Oleamide hydrolase 2; EC 3.5.1.99 from Homo sapiens
FAAH2 / Q6GMR7: fatty-acid amide hydrolase 2 (EC 3.5.1.99; EC 3.5.1.60) from Homo sapiens
Q6GMR7: amidase (EC 3.5.1.4); fatty acid amide hydrolase (EC 3.5.1.99) from Homo sapiens

34% id,
45% cov

More...

DVU0364: para-aminobenzoate/anthranilate synthase glutamine amidotransferase
is similar to:
PaperBLAST

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

30% id,
62% cov

DVU1043: GMP synthase
is similar to:
PaperBLAST

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

26% id,
63% cov

Sama_0794: gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) from Shewanella amazonensis

28% id,
53% cov

DVU1623: CTP synthase
is similar to:
PaperBLAST

BWI76_RS10705: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) from Klebsiella michiganensis

44% id,
21% cov

DVU3194: GTP-binding protein EngA
is similar to:
PaperBLAST

C1IC97: histone deacetylase (EC 3.5.1.98) from Hordeum vulgare

31% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

893456-894943 (frame -3) on 1944
is similar to:
PaperBLAST

FAAH_ARATH / Q7XJJ7: Fatty acid amide hydrolase; AtFAAH; N-acylethanolamine amidohydrolase; EC 3.5.1.99 from Arabidopsis thaliana
Q7XJJ7: fatty acid amide hydrolase (EC 3.5.1.99) from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
80% cov

FAAH1_PIG / Q9TUI8: Fatty-acid amide hydrolase 1; Anandamide amidase; Anandamide amidohydrolase 1; Fatty acid ester hydrolase; Oleamide hydrolase 1; EC 3.5.1.99; EC 3.1.1.- from Sus scrofa
Also see hits to annotated proteins above

28% id,
57% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory