Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 11 curated entries in PaperBLAST's database that match '3.5.3.13'.

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1825: amidohydrolase family protein
is similar to:
PaperBLAST

SMc00673: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Sinorhizobium meliloti

25% id,
94% cov

Ac3H11_2549: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Acidovorax sp.

26% id,
91% cov

Q9HU77: formimidoylglutamate deiminase (EC 3.5.3.13) from Pseudomonas aeruginosa

26% id,
58% cov

More...

DVU2900: amidohydrolase family protein
is similar to:
PaperBLAST

Ac3H11_2549: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Acidovorax sp.

25% id,
84% cov

PGA1_c36360: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Phaeobacter inhibens

29% id,
41% cov

SMc00673: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Sinorhizobium meliloti

33% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory