Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 51 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0417: arginine decarboxylase
is similar to:
PaperBLAST

A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Bacteroides dorei

42% id,
100% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

41% id,
100% cov

Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

40% id,
100% cov

More...

DVU2093: thiH protein
is similar to:
PaperBLAST

Q5R145: arginine decarboxylase (EC 4.1.1.19) from Malus sylvestris

42% id,
86% cov

Q5R145: arginine decarboxylase (EC 4.1.1.19) from Malus sylvestris

41% id,
14% cov

DVU1765: thiH protein, putative
is similar to:
PaperBLAST

Q5R145: arginine decarboxylase (EC 4.1.1.19) from Malus sylvestris

34% id,
93% cov

DVU1647: diaminopimelate decarboxylase
is similar to:
PaperBLAST

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

26% id,
60% cov

MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea

24% id,
53% cov

SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana
O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana

26% id,
47% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory