Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1647: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

 53% id,
99% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

 46% id,
97% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

 46% id,
97% cov

More...

DVU2566: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

 37% id,
97% cov

Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis

 36% id,
96% cov

DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli

 35% id,
99% cov

More...

DVUA0063: Orn/DAP/Arg family decarboxylase
is similar to:		 PaperBLAST

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

 22% id,
92% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

 28% id,
57% cov

DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum
P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum

 26% id,
56% cov

More...

DVU0417: arginine decarboxylase
is similar to:		 PaperBLAST

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

 25% id,
64% cov

DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori

 25% id,
61% cov

P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori

 23% id,
61% cov

More...

DVU1913: aspartate kinase, monofunctional class
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 29% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1987321-1988910 (frame +1) on 1944
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica
Also see hits to annotated proteins above

 29% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory