Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 12 curated entries in PaperBLAST's database that match '4.1.1.48'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0468: indole-3-glycerol phosphate synthase
is similar to:
PaperBLAST

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

43% id,
95% cov

trpC / Q9YGB5: indole-3-glycerol phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis
Q9YGB5: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermococcus kodakarensis

37% id,
93% cov

A1KJ27: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
A5U2W7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
P9WFX7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis

41% id,
83% cov

More...

DVU0469: N-(5-phosphoribosyl)anthranilate isomerase
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli

36% id,
43% cov

DVU0466: anthranilate synthase, glutamine amidotransferase component
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

39% id,
39% cov

DVU0364: para-aminobenzoate/anthranilate synthase glutamine amidotransferase
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

36% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory