Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 116 curated entries in PaperBLAST's database that match '4.1.2.13' as complete word(s).

These curated entries have 92 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0460: predicted phospho-2-dehydro-3-deoxyheptonate aldolase
is similar to:
PaperBLAST

aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii

56% id,
95% cov

fba / P58314: fructose-1,6-bisphosphate aldolase subunit (EC 4.1.2.13) from Pyrococcus furiosus

37% id,
98% cov

ALF1_THETK / P58315: Fructose-bisphosphate aldolase class 1; Fructose-bisphosphate aldolase class I; FBP aldolase; FBPA; EC 4.1.2.13 from Thermoproteus tenax

33% id,
92% cov

More...

DVU2143: fructose-1,6-bisphosphate aldolase, class II
is similar to:
PaperBLAST

Q9RHA2: fructose-bisphosphate aldolase (EC 4.1.2.13) from Thermus aquaticus

51% id,
97% cov

ALF_THECA / Q703I2: Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Thermus caldophilus

50% id,
97% cov

ALF_GIAIC / A8B2U2: Fructose-bisphosphate aldolase; Glfba; glFBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Giardia intestinalis

51% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory