Curated BLAST
Searching in Desulfovibrio vulgaris Hildenborough (882)
Found 21 curated entries in PaperBLAST's database that match '4.1.3.39'.
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query
DVU0343: HPCH/HPAI aldolase family protein
is similar to: | PaperBLAST |
BPHF_RHOJR / O05151: 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.39 from Rhodococcus jostii | 32% id,
91% cov |
Q47098: 4-hydroxy-2-oxoheptanedioate aldolase (EC 4.1.2.52); 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli | 31% id,
94% cov |
DVU2981: 2-isopropylmalate synthase
is similar to: | PaperBLAST |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis
P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 26% id,
91% cov |
xylK / P51019: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 24% id,
91% cov |
HOA_PSEUF / P51016: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp.
dmpG / P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.
P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp. | 23% id,
85% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 25% id,
79% cov |
HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli | 27% id,
71% cov |
cmtG / Q51983: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 27% id,
61% cov |
HOA_PSESP / Q9KWS0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp. | 27% id,
56% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 36% id,
35% cov |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 32% id,
39% cov |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans | 32% id,
27% cov |
More... |
DVUA0016: homocitrate synthase
is similar to: | PaperBLAST |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 29% id,
75% cov |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans | 29% id,
71% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 30% id,
68% cov |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 28% id,
69% cov |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis
P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 27% id,
68% cov |
More... |
DVU1914: 2-isopropylmalate synthase/homocitrate synthase family protein
is similar to: | PaperBLAST |
P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida | 24% id,
91% cov |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans | 28% id,
69% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 28% id,
50% cov |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis
P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis | 35% id,
25% cov |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 35% id,
24% cov |
HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli | 34% id,
24% cov |
More... |
DVU0398: HMGL-like domain protein
is similar to: | PaperBLAST |
HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae | 26% id,
41% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory