Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 94 curated entries in PaperBLAST's database that match '4.1.99.1'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU2204: tryptophanase
is similar to:
PaperBLAST

BWI76_RS03535: Tryptophanase (EC 4.1.99.1) from Klebsiella michiganensis

77% id,
100% cov

P28796: tryptophanase (EC 4.1.99.1) from Proteus vulgaris

65% id,
99% cov

A5EYI0: tryptophanase (EC 4.1.99.1) from Vibrio cholerae

58% id,
99% cov

More...

DVU1775: 3,4-dihydroxy-2-butanone 4-phosphate synthase
is similar to:
PaperBLAST

P66032: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Salmonella enterica

69% id,
97% cov

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

68% id,
97% cov

Q9KKP2: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Vibrio cholerae

64% id,
96% cov

More...

DVU1199: 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
is similar to:
PaperBLAST

A5U2B7: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Mycobacterium tuberculosis

53% id,
94% cov

RIBB_ECOLI / P0A7J0: 3,4-dihydroxy-2-butanone 4-phosphate synthase; DHBP synthase; EC 4.1.99.12 from Escherichia coli
LuxH / b3041: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
ribB / GB|AAN44559.1: 3,4-dihydroxy-2-butanone 4-phosphate synthase; EC 4.1.99.12 from Shigella flexneri
ribB / P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli
P0A7J0: 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC 4.1.99.12) from Escherichia coli

51% id,
90% cov

RIB3 / A5DHJ1: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) from Meyerozyma guilliermondii

47% id,
99% cov

More...

DVU1411: thiamine biosynthesis protein ThiC
is similar to:
PaperBLAST

D4GV87: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Haloferax volcanii

43% id,
86% cov

THIC_BACSU / P45740: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Bacillus subtilis
thiC / P45740: phosphomethylpyrimidine synthase monomer (EC 4.1.99.17) from Bacillus subtilis

39% id,
72% cov

THIC_CAUVC / Q9A6Q5: Phosphomethylpyrimidine synthase; Hydroxymethylpyrimidine phosphate synthase; HMP-P synthase; HMP-phosphate synthase; HMPP synthase; Thiamine biosynthesis protein ThiC; EC 4.1.99.17 from Caulobacter vibrioides
thiC / Q9A6Q5: HMP-P synthase monomer (EC 4.1.99.17) from Caulobacter vibrioides
Q9A6Q5: phosphomethylpyrimidine synthase (EC 4.1.99.17) from Caulobacter vibrioides

42% id,
66% cov

More...

DVU2093: thiH protein
is similar to:
PaperBLAST

THIH_ECOLI / P30140: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Escherichia coli
ThiB / b3990: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
thiH / P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli

42% id,
87% cov

THIH_SALTY / Q9S498: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Salmonella typhimurium
Q9S498: 2-iminoacetate synthase (EC 4.1.99.19) from Salmonella enterica

41% id,
87% cov

THIH_ECOLI / P30140: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Escherichia coli
ThiB / b3990: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
thiH / P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli

50% id,
10% cov

More...

DVU1765: thiH protein, putative
is similar to:
PaperBLAST

THIH_ECOLI / P30140: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Escherichia coli
ThiB / b3990: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
thiH / P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli
P30140: 2-iminoacetate synthase (EC 4.1.99.19) from Escherichia coli

34% id,
90% cov

THIH_SALTY / Q9S498: 2-iminoacetate synthase; Dehydroglycine synthase; Tyrosine lyase; EC 4.1.99.19 from Salmonella typhimurium
Q9S498: 2-iminoacetate synthase (EC 4.1.99.19) from Salmonella enterica

33% id,
90% cov

DVU2824: formate acetyltransferase
is similar to:
PaperBLAST

Q8L1A3: benzylsuccinate synthase (EC 4.1.99.11) from Thauera sp.

31% id,
90% cov

I6LHT8: benzylsuccinate synthase (EC 4.1.99.11) from Azoarcus sp.

31% id,
90% cov

bssA / Q8VPT7: benzylsuccinate synthase α subunit (EC 4.1.99.11) from Aromatoleum toluolicum
Q8VPT7: benzylsuccinate synthase (EC 4.1.99.11) from Azoarcus sp.

30% id,
90% cov

More...

DVU2272: formate acetyltransferase, putative
is similar to:
PaperBLAST

Q8L1A3: benzylsuccinate synthase (EC 4.1.99.11) from Thauera sp.

30% id,
90% cov

I6LHT8: benzylsuccinate synthase (EC 4.1.99.11) from Azoarcus sp.

30% id,
90% cov

bssA / Q8VPT7: benzylsuccinate synthase α subunit (EC 4.1.99.11) from Aromatoleum toluolicum
Q8VPT7: benzylsuccinate synthase (EC 4.1.99.11) from Azoarcus sp.

30% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory