Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 44 curated entries in PaperBLAST's database that match '4.2.1.6'.

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3373: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

35% id,
95% cov

DVU2368: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
is similar to:
PaperBLAST

fabZ: beta-hydroxyacyl-acyl carrier protein dehydratase; EC 4.2.1.60 from Toxoplasma gondii

42% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory