Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 130 curated entries in PaperBLAST's database that match '4.2.1.9'.

These curated entries have 94 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3373: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

54% id,
100% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

49% id,
96% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

44% id,
99% cov

More...

DVU0966: amino acid ABC transporter, periplasmic amino acid-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

27% id,
98% cov

DVU1910: YjeF-related protein
is similar to:
PaperBLAST

P94368: ADP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.136); ATP-dependent NAD(P)H-hydrate dehydratase (EC 4.2.1.93) from Bacillus subtilis

27% id,
97% cov

DVU0462: chorismate mutase/prephenate dehydratase
is similar to:
PaperBLAST

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SSE7: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

35% id,
73% cov

AROD2_PETHY / D3U716: Arogenate dehydratase 2; PhADT2; Prephenate dehydratase ADT3; EC 4.2.1.91; EC 4.2.1.51 from Petunia hybrida
D3U716: arogenate dehydratase (EC 4.2.1.91) from Petunia x

32% id,
79% cov

AROD6_ARATH / Q9SGD6: Arogenate dehydratase/prephenate dehydratase 6, chloroplastic; AtADT6; AtPDT6; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Q9SGD6: arogenate dehydratase (EC 4.2.1.91) from Arabidopsis thaliana

31% id,
77% cov

More...

DVU0675: amino acid ABC transporter, periplasmic amino acid-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

27% id,
89% cov

DVU0107: glutamine ABC transporter, periplasmic glutamine-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

25% id,
71% cov

DVU0752: amino acid ABC transporter, amino acid-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Q01269: arogenate dehydratase (EC 4.2.1.91) from Pseudomonas aeruginosa

26% id,
70% cov

DVU1064: aconitate hydratase, putative
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

29% id,
50% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

33% id,
35% cov

Ac3H11_1140: 2-methylisocitrate dehydratase (EC 4.2.1.99) from Acidovorax sp.

32% id,
33% cov

More...

DVU2982: 3-isopropylmalate dehydratase, large subunit, putative
is similar to:
PaperBLAST

Ac3H11_1140: 2-methylisocitrate dehydratase (EC 4.2.1.99) from Acidovorax sp.

25% id,
31% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

32% id,
21% cov

citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis

28% id,
24% cov

More...

DVU2983: 3-isopropylmalate dehydratase, small subunit
is similar to:
PaperBLAST

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium
acnA / Q8ZP52: aconitate hydratase 1 (EC 4.2.1.99) from Salmonella typhimurium

31% id,
13% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

28% id,
14% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

24% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1165843-1167870 (frame +1) on 1944
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator
Also see hits to annotated proteins above

29% id,
53% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus
Also see hits to annotated proteins above

32% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory