Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 30 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0085: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

28% id,
71% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / RF|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

22% id,
67% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

23% id,
62% cov

DVU0663: cysteine synthase A
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

25% id,
58% cov

DVU0470: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis

27% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory