Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 168 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1038: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
is similar to:
PaperBLAST

AO356_09800: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

48% id,
97% cov

Pf6N2E2_3839: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

48% id,
97% cov

SMc02570: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti

47% id,
100% cov

More...

DVU1677: triosephosphate isomerase
is similar to:
PaperBLAST

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

47% id,
95% cov

TPIS_RABIT / P00939: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Oryctolagus cuniculus

46% id,
97% cov

TPIS_HUMAN / P60174: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Homo sapiens
TPI1 / P60174: Triosephosphate isomerase (EC 5.3.1.1) from Homo sapiens

46% id,
97% cov

More...

DVU0160: carbohydrate isomerase, KpsF/GutQ family
is similar to:
PaperBLAST

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
P45395: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Escherichia coli

45% id,
97% cov

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

44% id,
97% cov

GUTQ_ECOLI / P17115: Arabinose 5-phosphate isomerase GutQ; API; G-API; Phosphosugar aldol-ketol isomerase; EC 5.3.1.13 from Escherichia coli
SrlQ / b2708: D-arabinose 5-phosphate isomerase GutQ (EC 5.3.1.13) from Escherichia coli
gutQ / P17115: D-arabinose 5-phosphate isomerase GutQ (EC 5.3.1.13) from Escherichia coli

40% id,
98% cov

More...

DVU2529: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

45% id,
60% cov

DVU0286: imidazoleglycerol phosphate synthase, cyclase subunit
is similar to:
PaperBLAST

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

27% id,
96% cov

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

27% id,
95% cov

PP_0292: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas putida

27% id,
96% cov

More...

DVU2064: oxidoreductase, 2-nitropropane dioxygenase family
is similar to:
PaperBLAST

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

27% id,
90% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

26% id,
91% cov

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

24% id,
32% cov

DVU2299: glycine/betaine/L-proline ABC transporter, ATP binding protein
is similar to:
PaperBLAST

KDSD_FRATT / Q5NGP7: Arabinose 5-phosphate isomerase KdsD; API; EC 5.3.1.13 from Francisella tularensis

21% id,
72% cov

DVU0054: dihydrouridine synthase family protein
is similar to:
PaperBLAST

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

34% id,
43% cov

DVU3156: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
is similar to:
PaperBLAST

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
P45395: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Escherichia coli

22% id,
57% cov

KPSF_ECOL6 / Q8FDQ2: Arabinose 5-phosphate isomerase KpsF; API; K-antigen-specific arabinose 5-phosphate isomerase; K-API; EC 5.3.1.13 from Escherichia coli

25% id,
46% cov

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

25% id,
42% cov

DVU1911: CBS domain protein
is similar to:
PaperBLAST

GUTQ_ECOLI / P17115: Arabinose 5-phosphate isomerase GutQ; API; G-API; Phosphosugar aldol-ketol isomerase; EC 5.3.1.13 from Escherichia coli
SrlQ / b2708: D-arabinose 5-phosphate isomerase GutQ (EC 5.3.1.13) from Escherichia coli
gutQ / P17115: D-arabinose 5-phosphate isomerase GutQ (EC 5.3.1.13) from Escherichia coli

33% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory