Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1677: triosephosphate isomerase
is similar to:		 PaperBLAST

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

 47% id,
95% cov

TPIS_RABIT / P00939: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Oryctolagus cuniculus
P00939: triose-phosphate isomerase (EC 5.3.1.1) from Oryctolagus cuniculus

 46% id,
97% cov

TPIS_HUMAN / P60174: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Homo sapiens
TPI1 / P60174: Triosephosphate isomerase (EC 5.3.1.1) from Homo sapiens
P60174: triose-phosphate isomerase (EC 5.3.1.1) from Homo sapiens

 46% id,
97% cov

More...

DVU2529: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 45% id,
60% cov

DVU2064: oxidoreductase, 2-nitropropane dioxygenase family
is similar to:		 PaperBLAST

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

 27% id,
90% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

 26% id,
91% cov

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

 24% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory