Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 193 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 146 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU2969: acetoacetyl-CoA synthase
is similar to:		 PaperBLAST

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

 57% id,
99% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

 58% id,
98% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 58% id,
96% cov

More...

DVU0748: acetyl-CoA synthetase
is similar to:		 PaperBLAST

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

 52% id,
99% cov

Q2I0L7: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

 52% id,
99% cov

ACSA_METTP / A0B8F1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Methanothrix thermoacetophila
A0B8F1: acetate-CoA ligase (EC 6.2.1.1) from Methanothrix thermoacetophila

 49% id,
98% cov

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DVU3065: AMP-binding enzyme family protein
is similar to:		 PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

 47% id,
95% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

 33% id,
97% cov

CCL4_HUMLU / M4IQQ5: 2-methylpropanoate--CoA ligase CCL4; HlCCL4; 2-methylbutanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus
CCL4 / M4IQQ5: isobutanoate/2-methylbutanoate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

 30% id,
94% cov

More...

DVU2250: AMP-binding protein
is similar to:		 PaperBLAST

ACSM3_MOUSE / Q3UNX5: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Mus musculus

 43% id,
94% cov

ACSM3_HUMAN / Q53FZ2: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Homo sapiens

 43% id,
93% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

 40% id,
94% cov

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DVU2970: acetyltransferase, GNAT family
is similar to:		 PaperBLAST

ACD1_ARCFU / O29057: Acetate--CoA ligase [ADP-forming] I; ADP-forming acetyl coenzyme A synthetase I; ACS I; EC 6.2.1.13 from Archaeoglobus fulgidus

 35% id,
99% cov

acd / A9WDH8: acetate—CoA ligase (ADP-forming) monomer (EC 6.2.1.13) from Chloroflexus aurantiacus

 34% id,
99% cov

ACDA2_PYRFU / Q8U3D6: Acetate--CoA ligase [ADP-forming] II subunit alpha; ADP-forming acetyl coenzyme A synthetase II subunit alpha; ACS II subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus

 34% id,
98% cov

More...

DVU1453: long-chain-fatty-acid--CoA ligase
is similar to:		 PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

 32% id,
96% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

 31% id,
95% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

 31% id,
93% cov

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DVU2137: succinyl-CoA synthetase, alpha/beta subunit (sucCD)
is similar to:		 PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

 37% id,
83% cov

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

 28% id,
92% cov

DVU3119: AMP-binding enzyme family protein
is similar to:		 PaperBLAST

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

 28% id,
86% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

 26% id,
90% cov

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

 26% id,
88% cov

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DVU0585: conserved hypothetical protein
is similar to:		 PaperBLAST

Q5JIA9: acetate-CoA ligase (ADP-forming) (subunit 1/2) (EC 6.2.1.13) from Thermococcus kodakarensis

 26% id,
85% cov

ACD2_ARCFU / O28341: Acetate--CoA ligase [ADP-forming] II; ADP-forming acetyl coenzyme A synthetase II; ACS II; EC 6.2.1.13 from Archaeoglobus fulgidus

 25% id,
75% cov

ACD_METJA / Q58010: Acetate--CoA ligase [ADP-forming]; ADP-forming acetyl coenzyme A synthetase; ACS; EC 6.2.1.13 from Methanocaldococcus jannaschii

 26% id,
63% cov

More...

DVU0373: CoA-binding domain protein
is similar to:		 PaperBLAST

ACD2_ARCFU / O28341: Acetate--CoA ligase [ADP-forming] II; ADP-forming acetyl coenzyme A synthetase II; ACS II; EC 6.2.1.13 from Archaeoglobus fulgidus

 27% id,
75% cov

ACD_METJA / Q58010: Acetate--CoA ligase [ADP-forming]; ADP-forming acetyl coenzyme A synthetase; ACS; EC 6.2.1.13 from Methanocaldococcus jannaschii

 26% id,
63% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

 26% id,
62% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2344958-2346835 (frame -3) on 1944
is similar to:		 PaperBLAST

ACSM3_MOUSE / Q3UNX5: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Mus musculus
Also see hits to annotated proteins above

 42% id,
98% cov

B7SBA0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens
Also see hits to annotated proteins above

 26% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory