Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 9 curated entries in PaperBLAST's database that match '6.3.2.43' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0162: carbamoyl-phosphate synthase, large subunit
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

24% id,
75% cov

VIMSS207864: lysyl-tRNA synthetase
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

39% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory