Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 6 curated entries in PaperBLAST's database that match '2-oxoacid:ferredoxin oxidoreductase%subunit alpha' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU1569: pyruvate ferredoxin oxidoreductase, alpha subunit
is similar to:
PaperBLAST

OFOA1_SULTO / Q96Y66: 2-oxoacid:ferredoxin oxidoreductase 1, subunit alpha; OFOR1; EC 1.2.7.11 from Sulfurisphaera tokodaii

34% id,
71% cov

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

34% id,
69% cov

OFOA_SULSP / P72578: 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 from Sulfolobus sp.

34% id,
71% cov

More...

DVU1945: pyruvate ferredoxin oxidoreductase, alpha subunit, putative
is similar to:
PaperBLAST

OFOA1_SULTO / Q96Y66: 2-oxoacid:ferredoxin oxidoreductase 1, subunit alpha; OFOR1; EC 1.2.7.11 from Sulfurisphaera tokodaii

32% id,
63% cov

OFOA_SULSP / P72578: 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 from Sulfolobus sp.

32% id,
62% cov

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

33% id,
60% cov

More...

DVU3349: pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein
is similar to:
PaperBLAST

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

35% id,
30% cov

OFOA1_AERPE / Q9YA13: 2-oxoacid:ferredoxin oxidoreductase 1, subunit alpha; OFOR1; EC 1.2.7.11 from Aeropyrum pernix

33% id,
31% cov

OFOA2_AERPE / Q9YBX7: 2-oxoacid:ferredoxin oxidoreductase 2, subunit alpha; OFOR2; EC 1.2.7.11 from Aeropyrum pernix

20% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory