Searching in Desulfovibrio vulgaris Hildenborough (882)
Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query
DVUA0096: major facilitator superfamily protein is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 31% id, 36% cov |
DVU1895: major facilitator superfamily protein is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 26% id, 39% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
129088-130368 (frame +1) on 1945 is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 29% id, 46% cov |
1968328-1969524 (frame +1) on 1944 is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 25% id, 45% cov |
Lawrence Berkeley National Laboratory