Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 3 curated entries in PaperBLAST's database that match 'propionyl-CoA synthetase' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU0748: acetyl-CoA synthetase
is similar to:
PaperBLAST

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium

40% id,
96% cov

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli

40% id,
96% cov

DVU2969: acetoacetyl-CoA synthase
is similar to:
PaperBLAST

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium

39% id,
98% cov

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli

39% id,
98% cov

DVU1453: long-chain-fatty-acid--CoA ligase
is similar to:
PaperBLAST

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli

27% id,
87% cov

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium

26% id,
87% cov

DVU2250: AMP-binding protein
is similar to:
PaperBLAST

YahU / b0335: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli
prpE / P77495: propionyl-CoA synthetase (EC 6.2.1.17) from Escherichia coli

29% id,
69% cov

PRPE_SALTY / P55912: Propionate--CoA ligase; Propionyl-CoA synthetase; EC 6.2.1.17 from Salmonella typhimurium

29% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory