Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough (882)

Found 3 curated entries in PaperBLAST's database that match 'sorbitol-6-phosphate dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Hildenborough, or try another query

DVU3137: oxidoreductase, short chain dehydrogenase/reductase family
is similar to:

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

30% id,
100% cov

srlD: sorbitol-6-phosphate dehydrogenase; EC from Escherichia coli

30% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1846657-1847685 (frame +1) on 1944
is similar to:

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC from Streptococcus mutans

31% id,
69% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory