Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Methanosarcina acetivorans C2A, or try another query

MA_RS03605 MA0688 WP_011020733.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

25% id,
39% cov

MA_RS24160 MA4630 WP_048066036.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

28% id,
36% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

30% id,
11% cov

fni MA_RS03175 MA0604 WP_011020653.1: type 2 isopentenyl-diphosphate Delta-isomerase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

28% id,
34% cov

MA_RS02750 MA0526 WP_011020575.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

23% id,
38% cov

MA_RS22030 MA4218 WP_011024102.1: glutamate synthase-related protein
is similar to:
PaperBLAST

CYB2_TALSN / B8MKR3: L-lactate dehydrogenase (cytochrome); EC 1.1.2.3 from Talaromyces stipitatus

30% id,
24% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

38% id,
18% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

35% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory