Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.2.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanosarcina acetivorans C2A, or try another query

MA_RS24165 MA4631 WP_048066616.1: FAD-binding oxidoreductase
is similar to:
PaperBLAST

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

36% id,
94% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

34% id,
92% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

34% id,
82% cov

More...

MA_RS23055 MA4410 WP_011024289.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:
PaperBLAST

DLD_ARATH / Q94AX4: D-lactate dehydrogenase [cytochrome], mitochondrial; AtD-LDH; D-lactate ferricytochrome C oxidoreductase; Glycolate dehydrogenase; EC 1.1.2.4 from Arabidopsis thaliana
DLD / Q94AX4: D-lactate dehydrogenase (cytochrome c) monomer (EC 1.1.2.4) from Arabidopsis thaliana

26% id,
81% cov

W1QLN6: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Ogataea angusta

26% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory