Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 41 curated entries in PaperBLAST's database that match '1.2.1.10' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methanosarcina acetivorans C2A, or try another query

MA_RS15015 MA2860 WP_048065546.1: aldehyde dehydrogenase family protein
is similar to:		 PaperBLAST

B0K315: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

 25% id,
91% cov

MA_RS21285 MA4079 WP_193589538.1: aldehyde dehydrogenase family protein
is similar to:		 PaperBLAST

EUTE_SALTY / P41793: Acetaldehyde dehydrogenase (acetylating) EutE; Ethanolamine utilization protein EutE; EC 1.2.1.10 from Salmonella typhimurium
eutE / P41793: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Salmonella typhimurium

 25% id,
85% cov

EUTE_ECOLI / P77445: Acetaldehyde dehydrogenase (acetylating) EutE; Ethanolamine utilization protein EutE; EC 1.2.1.10 from Escherichia coli
YffX / b2455: acetaldehyde dehydrogenase (acetylating) EutE (EC 1.2.1.10) from Escherichia coli
eutE / P77445: acetaldehyde dehydrogenase (acetylating) EutE (EC 1.2.1.10) from Escherichia coli

 26% id,
82% cov

MA_RS13700 MA2630 WP_048065465.1: iron-containing alcohol dehydrogenase
is similar to:		 PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

 42% id,
42% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

 40% id,
44% cov

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus
A3DCI2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

 35% id,
47% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3259508-3260716 (frame +2) on NC_003552.1 Methanosarcina acetivorans C2A, complete sequence
is similar to:		 PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

 39% id,
49% cov

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus
A3DCI2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus
Also see hits to annotated proteins above

 35% id,
49% cov

Q1RS84: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

 33% id,
44% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory