Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methanosarcina acetivorans C2A, or try another query

MA_RS10245 MA1966 WP_011021961.1: asparagine synthetase B
is similar to:
PaperBLAST

F2DDF6: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Hordeum vulgare

29% id,
98% cov

ASNS_HUMAN / P08243: Asparagine synthetase [glutamine-hydrolyzing]; Cell cycle control protein TS11; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Homo sapiens
P08243: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Homo sapiens

28% id,
90% cov

Q9SP19: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

30% id,
82% cov

More...

purF MA_RS16685 MA3193 WP_048065634.1: amidophosphoribosyltransferase
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

28% id,
28% cov

glmS MA_RS15825 MA3023 WP_011022962.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

29% id,
12% cov

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

41% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory