Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 3 curated entries in PaperBLAST's database that match 'IGP synthase, amidotransferase subunit' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanosarcina acetivorans C2A, or try another query

hisH MA_RS04735 MA0913 WP_011020951.1: imidazole glycerol phosphate synthase subunit HisH
is similar to:
PaperBLAST

HSERO_RS20325: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Herbaspirillum seropedicae

44% id,
99% cov

DVU0285: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

39% id,
96% cov

DvMF_2305: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

39% id,
97% cov

MA_RS14105 MA2696 WP_011022656.1: type 1 glutamine amidotransferase
is similar to:
PaperBLAST

DvMF_2305: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

28% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory