Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%small' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methanosarcina acetivorans C2A, or try another query

carA MA_RS11135 MA2144 WP_011022130.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

40% id,
96% cov

MA_RS23955 MA4590 WP_011024463.1: GMP synthase subunit A
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

27% id,
49% cov

MA_RS15660 MA2986 WP_011022926.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

29% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory