Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanosarcina acetivorans C2A (GCF_000007345.1)

Found 1 curated entries in PaperBLAST's database that match 'aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanosarcina acetivorans C2A, or try another query

gatB MA_RS23595 MA4524 WP_011024400.1: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
is similar to:
PaperBLAST

GATB_STAAU / Q9RF06: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- from Staphylococcus aureus

39% id,
98% cov

gatE MA_RS15025 MA2862 WP_011022814.1: Glu-tRNA(Gln) amidotransferase subunit GatE
is similar to:
PaperBLAST

GATB_STAAU / Q9RF06: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- from Staphylococcus aureus

30% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory