Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.255' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

MCA_RS07740 MCA1575 WP_010960842.1: NAD(P)-dependent alcohol dehydrogenase
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

48% id,
96% cov

MCA_RS03830 MCA0775 WP_010960102.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

29% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

819368-820435 (frame +2) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:
PaperBLAST

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Also see hits to annotated proteins above

29% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory