Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 14 curated entries in PaperBLAST's database that match '1.1.1.71' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

MCA_RS07740 MCA1575 WP_010960842.1: NAD(P)-dependent alcohol dehydrogenase
is similar to:
PaperBLAST

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

51% id,
96% cov

fabG MCA_RS09790 MCA2001 WP_010961246.1: 3-oxoacyl-ACP reductase FabG
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

31% id,
90% cov

MCA_RS03830 MCA0775 WP_010960102.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

30% id,
88% cov

Q9HMB6: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp.

26% id,
71% cov

MCA_RS06275 MCA1271 WP_010960554.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

30% id,
64% cov

MCA_RS12065 MCA2459 WP_010961684.1: SDR family oxidoreductase
is similar to:
PaperBLAST

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

30% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1354832-1355767 (frame -1) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:
PaperBLAST

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens
Also see hits to annotated proteins above

30% id,
68% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory