Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 27 curated entries in PaperBLAST's database that match '1.2.1.26' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

MCA_RS08650 MCA1756 WP_010961010.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

KGSD1_AZOBR / Q1JUP4: Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 from Azospirillum brasilense
Q1JUP4: succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense

43% id,
97% cov

xylA / A0A0H3C801: 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Caulobacter vibrioides

39% id,
98% cov

Pf1N1B4_1109: 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) from Pseudomonas fluorescens

38% id,
98% cov

More...

MCA_RS09240 MCA1880 WP_010961132.1: glutamate-5-semialdehyde dehydrogenase
is similar to:
PaperBLAST

KGSDH_HALVD / D4GP41: Alpha-ketoglutarate semialdehyde dehydrogenase; KGSADH; EC 1.2.1.26 from Haloferax volcanii
xacF / D4GP41: α-ketoglutarate semialdehyde dehydrogenase subunit (EC 1.2.1.26) from Haloferax volcanii

24% id,
83% cov

MCA_RS00965 MCA0195 WP_010959562.1: RtcB family protein
is similar to:
PaperBLAST

KGSDH_ACIAD / Q6FFQ0: Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 from Acinetobacter baylyi
ACIAD0131 / Q6FFQ0: α-ketoglutarate semialdehyde dehydrogenase subunit (EC 1.2.1.26) from Acinetobacter baylyi
Q6FFQ0: 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Acinetobacter baylyi

26% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory