Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

gcvH MCA_RS00255 MCA0051 WP_010959423.1: glycine cleavage system protein GcvH
is similar to:		 PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 46% id,
66% cov

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

 39% id,
77% cov

gcvPB MCA_RS01715 MCA0348 WP_010959709.1: aminomethyl-transferring glycine dehydrogenase subunit GcvPB
is similar to:		 PaperBLAST

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

 40% id,
50% cov

BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis

 41% id,
49% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

 41% id,
48% cov

More...

gcvPA MCA_RS01720 MCA0349 WP_010959710.1: aminomethyl-transferring glycine dehydrogenase subunit GcvPA
is similar to:		 PaperBLAST

GCSP_SCHPO / Q09785: Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe

 33% id,
39% cov

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

 33% id,
39% cov

GCSP_HUMAN / P23378: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens
GLDC / P23378: Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens
P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

 31% id,
40% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

51869-52276 (frame -1) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:		 PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens
Also see hits to annotated proteins above

 45% id,
73% cov

351934-353325 (frame -2) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:		 PaperBLAST

GCSP_HUMAN / P23378: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens
GLDC / P23378: Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens
P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens
Also see hits to annotated proteins above

 31% id,
42% cov

GCSP_SCHPO / Q09785: Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

 33% id,
40% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 32% id,
40% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory