Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

MCA_RS04760 MCA0970 WP_010960275.1: PfkB family carbohydrate kinase
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

32% id,
98% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

32% id,
99% cov

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

32% id,
99% cov

More...

hldE MCA_RS08545 MCA1736 WP_010960990.1: bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
is similar to:
PaperBLAST

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

28% id,
96% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
96% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

26% id,
98% cov

More...

rpiA MCA_RS01750 MCA0355 WP_010959716.1: ribose-5-phosphate isomerase RpiA
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

35% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory