Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

speA MCA_RS10020 MCA2047 WP_010961291.1: biosynthetic arginine decarboxylase
is similar to:		 PaperBLAST

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

 53% id,
98% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

 52% id,
98% cov

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

 51% id,
98% cov

More...

lysA MCA_RS04225 MCA0858 WP_010960178.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

 25% id,
58% cov

MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea

 26% id,
47% cov

SPE1_ARATH / Q9SI64: Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana
Q9SI64: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana

 26% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory