Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

511913-513187 (frame +2) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:
PaperBLAST

PRPB1_CORGL / Q8NSH8: Probable 2-methylisocitrate lyase 1; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

42% id,
17% cov

PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

42% id,
17% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory